Update dependencies.

build.gradle

     dependencies {
         compile group: 'com.dmdirc', name: 'client', version: '+', changing: true
 
-        compile group: 'com.google.code.findbugs', name: 'jsr305', version: '3.0.0'
-        compile group: 'com.squareup.dagger', name: 'dagger-compiler', version: '1.2.1'
+        compile group: 'com.google.code.findbugs', name: 'jsr305', version: '3.0.1'
+        compile group: 'com.squareup.dagger', name: 'dagger-compiler', version: '1.2.4'
 
         testCompile group: 'junit', name: 'junit', version: '4.12'
-        testCompile group: 'org.mockito', name: 'mockito-core', version: '1.10.17'
+        testCompile group: 'org.mockito', name: 'mockito-core', version: '1.10.19'
 
-        pmd group: 'net.sourceforge.pmd', name: 'pmd-core', version: '5.2.3'
-        pmd group: 'net.sourceforge.pmd', name: 'pmd-java', version: '5.2.3'
+        pmd group: 'net.sourceforge.pmd', name: 'pmd-core', version: '5.4.1'
+        pmd group: 'net.sourceforge.pmd', name: 'pmd-java', version: '5.4.1'
     }
 
     task copyPluginConfig(type: Copy) {
 
     dependencies {
         classpath group: 'com.dmdirc', name: 'git-version', version: '1.0'
-        classpath 'org.kt3k.gradle.plugin:coveralls-gradle-plugin:2.1.0'
+        classpath 'org.kt3k.gradle.plugin:coveralls-gradle-plugin:2.6.3'
     }
 }
 
 task wrapper(type: Wrapper) {
-    gradleVersion = '2.11'
+    gradleVersion = '2.13'
 }
 
 subprojects.each { evaluationDependsOn it.path }

gradle/wrapper/gradle-wrapper.properties

-#Sun Feb 21 16:59:09 GMT 2016
+#Thu May 05 16:39:13 BST 2016
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-2.11-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-2.13-bin.zip

gradlew

     ;;
 esac
 
-# For Cygwin, ensure paths are in UNIX format before anything is touched.
-if $cygwin ; then
-    [ -n "$JAVA_HOME" ] && JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
-fi
-
 # Attempt to set APP_HOME
 # Resolve links: $0 may be a link
 PRG="$0"
     fi
 done
 SAVED="`pwd`"
-cd "`dirname \"$PRG\"`/" >&-
+cd "`dirname \"$PRG\"`/" >/dev/null
 APP_HOME="`pwd -P`"
-cd "$SAVED" >&-
+cd "$SAVED" >/dev/null
 
 CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
 
 if $cygwin ; then
     APP_HOME=`cygpath --path --mixed "$APP_HOME"`
     CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
+    JAVACMD=`cygpath --unix "$JAVACMD"`
 
     # We build the pattern for arguments to be converted via cygpath
     ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`

gradlew.bat

 goto fail
 
 :init
-@rem Get command-line arguments, handling Windowz variants
+@rem Get command-line arguments, handling Windows variants
 
 if not "%OS%" == "Windows_NT" goto win9xME_args
 if "%@eval[2+2]" == "4" goto 4NT_args

logging/build.gradle

  */
 
 dependencies {
-    testCompile group: 'com.google.jimfs', name: 'jimfs', version: '1.0'
-}
+    testCompile group: 'com.google.jimfs', name: 'jimfs', version: '1.1'
+}

nickcolours/build.gradle

 dependencies {
   compile plugin('ui_swing')
-  compile group: 'com.google.auto.value', name: 'auto-value', version: '1.0'
+  compile group: 'com.google.auto.value', name: 'auto-value', version: '1.2'
 }

sessionlock/build.gradle

 dependencies {
-  bundle group: 'net.java.dev.jna', name: 'jna', version: '4.1.0'
-  bundle group: 'net.java.dev.jna', name: 'jna-platform', version: '4.1.0'
+  bundle group: 'net.java.dev.jna', name: 'jna', version: '4.2.2'
+  bundle group: 'net.java.dev.jna', name: 'jna-platform', version: '4.2.2'
   bundle group: 'com.greboid.libraries', name: 'locksupport', version: 'latest.release'
 }

ui_swing/build.gradle

 dependencies {
-  bundle group: 'com.miglayout', name: 'miglayout-swing', version: '4.2'
+  bundle group: 'com.miglayout', name: 'miglayout-swing', version: '5.0'
   bundle group: 'com.greboid.libraries', name: 'menuscroller', version: 'latest.release'
 }

ui_web2/build.gradle

 dependencies {
-  bundle group: 'com.sparkjava', name: 'spark-core', version: '2.3'
+  bundle group: 'com.sparkjava', name: 'spark-core', version: '2.5'
   bundle group: 'com.google.code.gson', name: 'gson', 'version': '2.5'
 }

windowflashing/build.gradle

 dependencies {
   compile plugin('ui_swing')
-  bundle group: 'net.java.dev.jna', name: 'jna', version: '4.1.0'
-  bundle group: 'net.java.dev.jna', name: 'jna-platform', version: '4.1.0'
+  bundle group: 'net.java.dev.jna', name: 'jna', version: '4.2.2'
+  bundle group: 'net.java.dev.jna', name: 'jna-platform', version: '4.2.2'
 }